acml

AMD Core Math Library (ACML) for x86 and amd64 CPUs

amd

Library to order a sparse matrix prior to Cholesky factorization

armadillo

Streamlined C++ linear algebra library

arpack

Arnoldi package library to solve large scale eigenvalue problems.

arprec

Arbitrary precision float arithmetics and functions

balbes-db

The database for the BALBES automated crystallographic molecular replacement pipeline

beagle

Open BEAGLE, a versatile EC/GA/GP framework

blas-atlas

Automatically Tuned Linear Algebra Software BLAS implementation

blas-reference

Basic Linear Algebra Subprograms F77 reference implementations

btf

Algorithm for matrix permutation into block triangular form

buddy

Binary Decision Diagram Package

camd

Library to order a sparse matrix prior to Cholesky factorization

cbflib

Library providing a simple mechanism for accessing CBF files and imgCIF files

cblas-reference

C wrapper interface to the F77 reference BLAS implementation

ccfits

C++ interface for cfitsio

ccolamd

Constrained column approximate minimum degree ordering algorithm

ccp4-libs

Protein X-ray crystallography toolkit - Libraries

ccpn-data

The Collaborative Computing Project for NMR - Data

cctbx

Computational Crystallography Toolbox

cdd+

Another implementation of the double description method

cddlib

C implementation of the Double Description Method of Motzkin et al.

cdf

Common Data Format I/O library for multi-dimensional data sets

cfitsio

C and Fortran library for manipulating FITS files

cgcode

Conjugate gradient Codes for large sparse linear systems

cholmod

Sparse Cholesky factorization and update/downdate library

cifparse-obj

Provides an object-oriented application interface to information in mmCIF format

clapack

f2c'ed version of LAPACK

clashscore-db

Clashscore-db for clashlist

clipper

Object-oriented libraries for crystallographic data and crystallographic computation

cln

Class library (C++) for numbers

cminpack

C implementation of the MINPACK nonlinear optimization library

colamd

Column approximate minimum degree ordering algorithm

colpack

C++ algorithms for specialized vertex coloring problems

coot-data

Data for the Crystallographic Object-Oriented Toolkit

cqrlib

An ANSI C implementation of a utility library for quaternion arithmetic and quaternion rotation math

cxsparse

Extended sparse matrix package.

djbfft

extremely fast library for floating-point convolution

dsdp

Software for interior-point for semidefinite programming

fetk

The Finite Element ToolKit - Meta package

fftw

Fast C library for the Discrete Fourier Transform

flann

Library for performing fast approximate nearest neighbor searches in high dimensional spaces

freesteam

Open source implementation of IF97 steam tables

galib

Library for genetic algorithms in C++ programs

gamer

Geometry-preserving Adaptive MeshER

gaul-devel

Genetic Algorithm Utility Library

gdal

Translator library for raster geospatial data formats (includes OGR support)

geos

Geometry engine library for Geographic Information Systems

gerris

The Gerris Flow Solver

getdata

Reference implementation of the Dirfile, format for time-ordered binary data

gpp4

A standalone, drop-in replacement for the CCP4 library

grib_api

Library for decoding WMO FM-92 GRIB messages

gsl

The GNU Scientific Library

gts

GNU Triangulated Surface Library

hdf

General purpose library and format for storing scientific data

hdf5

General purpose library and file format for storing scientific data

hypre

Parallel matrix preconditioners library

idlmarkwardt

Craig Marqwardt IDL procedures (MPFIT, CMSVLIB, etc)

inchi

A program and library for generating standard and non-standard InChI and InChIKeys

indilib

INDI Astronomical Control Protocol library

io_lib

A general purpose trace and experiment file reading/writing interface

ipp

Intel(R) Integrated Performance Primitive library for multimedia and data processing

itpp

C++ library of mathematical, signal processing and communication

jama

Java-like matrix C++ templates

jmol-acme

Portions of the Acme collection required for jMol

klu

Sparse LU factorization for circuit simulation

lapack-atlas

F77 and C LAPACK implementations using available ATLAS routines

lapack-reference

FORTRAN reference implementation of LAPACK Linear Algebra PACKage

ldl

Simple but educational LDL^T matrix factorization algorithm

libbufr

ECMWF BUFR library - includes both C and Fortran example utilities

libcmatrix

lite version of pNMRsim

libcore

Robust numerical and geometric computation library

libctl

Guile-based library for scientific simulations

libdap

Implementation of a C++ SDK for DAP 2.0 and 3.2

libecwj2

Library for both the ECW and the ISO JPEG 2000 image file formats

libexcelformat

reading, writing, and editing of XLS (BIFF8 format) files using C++

libgenome

Library for sci-biology/mauve

libgeotiff

Library for reading TIFF files with embedded tags for geographic (cartographic) information

libghemical

Chemical quantum mechanics and molecular mechanics

libint

Matrix elements (integrals) evaluation over Cartesian Gaussian functions

libmems

Library for sci-biology/mauve

libmuscle

Library for sci-biology/mauve

libnova

Celestial Mechanics and Astronomical Calculation Library

liborigin

Library for reading OriginLab OPJ project files

libpdb

PDB Record I/O Libraries -- c version

libpdb++

PDB Record I/O Libraries -- c++ version

libqalculate

A modern multi-purpose calculator library

libsvm

Library for Support Vector Machines

libticables2

Library to handle different link cables for TI calculators

libticalcs2

Library for communication with TI calculators

libticonv

Charset conversion library for TI calculators

libtifiles2

Library for TI calculator files

linux-gpib

Kernel module and driver library for GPIB (IEEE 488.2) hardware

lis

Library of Iterative Solvers for Linear Systems

lrslib

self-contained ANSI C implementation of the reverse search algorithm

mathgl

Math Graphics Library

matio

Library for reading and writing matlab files

mc

2D/3D AFEM code for nonlinear geometric PDE

mccp4

Mini-CCP4 library including mtz and map I/O

metis

A package for unstructured serial graph partitioning

minuit

A C++ physics analysis tool for function minimization

mkl

Intel(R) Math Kernel Library: linear algebra, fft, math functions

mmdb

The Coordinate Library, designed to assist CCP4 developers in working with coordinate files

mmtk

Molecular Modeling ToolKit for Python

monomer-db

Monomer library used for macromolecular structure building and refinement

mpfi

Multiple precision interval arithmetic library based on MPFR

mpir

Library for arbitrary precision integer arithmetic derived from version 4.2.1 of gmp

neartree

Function library efficiently solving the Nearest Neighbor Problem(known as the post office problem)

netcdf

Scientific library and interface for array oriented data access

netcdf-cxx

C++ library for netCDF

netcdf-fortran

Scientific library and interface for array oriented data access

nlopt

Non-linear optimization library

oc

Network Data Access Protocol client C library

ogdi

Open Geographical Datastore Interface, a GIS support library

opencascade

Software development platform for CAD/CAE, 3D surface/solid modeling and data exchange

openfoam

Open Field Operation and Manipulation - CFD Simulation Toolbox

openfoam-bin

Open Field Operation and Manipulation - CFD Simulation Toolbox

parmetis

Parallel graph partitioner

parmgridgen

Software for parallel (mpi) generating coarse grids

pgplot

FORTRAN/C device-independent scientific graphic library

plotmm

Plot widget for GTKmm

plplot

Multi-language scientific plotting library

primegen

A small, fast library to generate primes in order

proj

Proj.4 cartographic projection software with updated NAD27 grids

punc

Portable Understructure for Numerical Computing

pycifrw

Provides support for reading and writing of CIF using python

pymmlib

Toolkit and library for the analysis and manipulation of macromolecular structural models

qd

Quad-double and double-double float arithmetics

qfits

ESO stand-alone C library offering easy access to FITS files.

qrupdate

Library for updating of QR and Cholesky decompositions

rosetta-db

Essential database for rosetta

rosetta-fragments

Fragment library for rosetta

scikits

Common files for python scikits

scikits_image

Image processing routines for SciPy

scikits_learn

Python modules for machine learning and data mining

scikits_optimization

Python module for numerical optimization

scikits_statsmodels

Statistical computations and models for use with SciPy

scikits_timeseries

SciPy module for manipulating, reporting, and plotting time series

scipy

Scientific algorithms library for Python

scotch

Software for graph, mesh and hypergraph partitioning

shapelib

Library for manipulating ESRI Shapefiles

spooles

SParse Object Oriented Linear Equations Solver

spqr

Multithreaded multifrontal sparse QR factorization library

spr

Statistical analysis and machine learning library

ssm

A macromolecular coordinate superposition library

starparse

Library for parsing NMR star files (peak-list format) and CIF files

suitesparse

Meta package for a suite of sparse matrix tools

superlu

Sparse LU factorization library

szip

Implementation of the extended-Rice lossless compression algorithm

ta-lib

Technical Analysis Library for analyzing financial markets trends

tamu_anova

ANOVA Extensions to the GNU Scientific Library

taucs

C library of sparse linear solvers

tnt

Template Numerical Toolkit: C++ headers for array and matrices

torch

Machine-learning library, written in simple C++

udunits

Library for manipulating units of physical quantities

ufconfig

Common configuration scripts for the SuiteSparse libraries

umfpack

Unsymmetric multifrontal sparse LU factorization library

vecmath-objectclub

Unofficial free implementation of Sun javax.vecmath by Kenji Hiranabe

votca-tools

Votca tools library

vtk

The Visualization Toolkit

xgks-pmel

PMEL fork of XGKS, an X11-based version of the ANSI Graphical Kernel System.

xylib

Experimental x-y data reading library

acml

hdf5

netcdf-cxx

amd

hypre

netcdf-fortran

armadillo

idlmarkwardt

nlopt

arpack

inchi

oc

arprec

indilib

ogdi

balbes-db

io_lib

opencascade

beagle

ipp

openfoam

blas-atlas

itpp

openfoam-bin

blas-reference

jama

parmetis

btf

jmol-acme

parmgridgen

buddy

klu

pgplot

camd

lapack-atlas

plotmm

cbflib

lapack-reference

plplot

cblas-reference

ldl

primegen

ccfits

libbufr

proj

ccolamd

libcmatrix

punc

ccp4-libs

libcore

pycifrw

ccpn-data

libctl

pymmlib

cctbx

libdap

qd

cdd+

libecwj2

qfits

cddlib

libexcelformat

qrupdate

cdf

libgenome

rosetta-db

cfitsio

libgeotiff

rosetta-fragments

cgcode

libghemical

scikits

cholmod

libint

scikits_image

cifparse-obj

libmems

scikits_learn

clapack

libmuscle

scikits_optimization

clashscore-db

libnova

scikits_statsmodels

clipper

liborigin

scikits_timeseries

cln

libpdb

scipy

cminpack

libpdb++

scotch

colamd

libqalculate

shapelib

colpack

libsvm

spooles

coot-data

libticables2

spqr

cqrlib

libticalcs2

spr

cxsparse

libticonv

ssm

djbfft

libtifiles2

starparse

dsdp

linux-gpib

suitesparse

fetk

lis

superlu

fftw

lrslib

szip

flann

mathgl

ta-lib

freesteam

matio

tamu_anova

galib

mc

taucs

gamer

mccp4

tnt

gaul-devel

metis

torch

gdal

minuit

udunits

geos

mkl

ufconfig

gerris

mmdb

umfpack

getdata

mmtk

vecmath-objectclub

gpp4

monomer-db

votca-tools

grib_api

mpfi

vtk

gsl

mpir

xgks-pmel

gts

neartree

xylib

hdf

netcdf